Updated: Wed Dec 17 17:11:25 2014
| Sample | Total.DMR | Hyper.DMR | Hypo.DMR |
|---|---|---|---|
| Cortex-HuFNSC02_Cortex-HuFNSC04 | 1283 | 179 | 1104 |
| GE-HuFNSC02_GE-HuFNSC04 | 3002 | 722 | 2280 |
| proximal.DMRs | unique.genes | DE.DMRs | unique.DE.genes | same.direction | |
|---|---|---|---|---|---|
| Cortex04.UMRs | 7 | 7 | 0 | 0 | 0 |
| Cortex02.UMRs | 215 | 215 | 24 | 19 | 21 |
| GE04.UMRs | 37 | 36 | 6 | 5 | 3 |
| GE02.UMRs | 402 | 402 | 64 | 57 | 49 |
| id | name | description |
|---|---|---|
| ENSG00000189334 | S100A14 | S100_calcium_binding_protein_A14_[Source:HGNC_Symbol;Acc:18901] |
| ENSG00000237693 | IRGM | immunity-related_GTPase_family,M[Source:HGNC_Symbol;Acc:29597] |
| ENSG00000124564 | SLC17A3 | solute_carrier_family_17_(sodium_phosphate),member3_[Source:HGNC_Symbol;Acc:10931] |
| id | name | description | DM | DE |
|---|---|---|---|---|
| ENSG00000134954 | ETS1 | v-ets_erythroblastosis_virus_E26_oncogene_homolog_1_(avian)_[Source:HGNC_Symbol;Acc:3488] | hyper | UP |
| ENSG00000136352 | NKX2-1 | NK2_homeobox_1_[Source:HGNC_Symbol;Acc:11825] | hyper | UP |
| ENSG00000165588 | OTX2 | orthodenticle_homeobox_2_[Source:HGNC_Symbol;Acc:8522] | hyper | UP |
| ENSG00000231421 | hyper | DN | ||
| ENSG00000155760 | FZD7 | frizzled_family_receptor_7_[Source:HGNC_Symbol;Acc:4045] | hyper | DN |
| id | name | description | DM | DE |
|---|---|---|---|---|
| ENSG00000255737 | NA | HCG2014417,isoformCRA_aUncharacterized_proteincDNA_FLJ59598_[Source:UniProtKB/TrEMBL;Acc:B7Z718] | hypo | UP |
| ENSG00000167178 | ISLR2 | immunoglobulin_superfamily_containing_leucine-rich_repeat_2_[Source:HGNC_Symbol;Acc:29286] | hypo | UP |
| ENSG00000161999 | JMJD8 | jumonji_domain_containing_8_[Source:HGNC_Symbol;Acc:14148] | hypo | UP |
| ENSG00000051523 | CYBA | cytochrome_b-245,alphapolypeptide_[Source:HGNC_Symbol;Acc:2577] | hypo | UP |
| ENSG00000169515 | CCDC8 | coiled-coil_domain_containing_8_[Source:HGNC_Symbol;Acc:25367] | hypo | UP |
| ENSG00000205927 | OLIG2 | oligodendrocyte_lineage_transcription_factor_2_[Source:HGNC_Symbol;Acc:9398] | hypo | UP |
| ENSG00000189060 | H1F0 | H1_histone_family,member0_[Source:HGNC_Symbol;Acc:4714] | hypo | UP |
| ENSG00000146904 | EPHA1 | EPH_receptor_A1_[Source:HGNC_Symbol;Acc:3385] | hypo | UP |
| ENSG00000165072 | MAMDC2 | MAM_domain_containing_2_[Source:HGNC_Symbol;Acc:23673] | hypo | UP |
| TF | UMR17week_Cortex | UMR13week_Cortex | Ratio_Cortex | UMR17week_GE | UMR13week_GE | Ratio_GE |
|---|---|---|---|---|---|---|
| MAZ | 133 | 5 | 26.6000 | 319 | 12 | 26.5833 |
| GTF2F1 | 28 | 1 | 28.0000 | 103 | 2 | 51.5000 |
| ZBTB7A | 97 | 3 | 32.3333 | 201 | 3 | 67.0000 |
| HMGN3 | 66 | 2 | 33.0000 | 131 | 4 | 32.7500 |
| NRF1 | 34 | 1 | 34.0000 | 64 | 1 | 64.0000 |
| MXI1 | 112 | 3 | 37.3333 | 262 | 7 | 37.4286 |
| E2F4 | 50 | 1 | 50.0000 | 110 | 1 | 110.0000 |
| CCNT2 | 87 | 1 | 87.0000 | 148 | 4 | 37.0000 |
| E2F6 | 140 | 1 | 140.0000 | 263 | 8 | 32.8750 |
| UP | DN | DE | GW | |
|---|---|---|---|---|
| cortex01_cortex03 | 284 | 281 | 565 | 17 vs 15 |
| cortex01_cortex04 | 365 | 165 | 530 | 17 vs 13 |
| cortex02_cortex03 | 398 | 283 | 681 | 17 vs 15 |
| cortex02_cortex04 | 497 | 225 | 722 | 17 vs 13 |
| cortex03_cortex04 | 459 | 183 | 642 | 15 vs 13 |
| GE01_GE03 | 587 | 274 | 861 | 17 vs 15 |
| GE01_GE04 | 645 | 238 | 883 | 17 vs 13 |
| GE02_GE03 | 609 | 312 | 921 | 17 vs 15 |
| GE02_GE04 | 610 | 259 | 869 | 17 vs 13 |
| GE03_GE04 | 313 | 232 | 545 | 15 vs 13 |
| id | name | description |
|---|---|---|
| ENSG00000168542 | COL3A1 | collagen,typeIII,alpha1_[Source:HGNC_Symbol;Acc:2201] |
| ENSG00000133636 | NTS | neurotensin_[Source:HGNC_Symbol;Acc:8038] |
| ENSG00000066032 | CTNNA2 | catenin_(cadherin-associated_protein),alpha2_[Source:HGNC_Symbol;Acc:2510] |
| ENSG00000135063 | FAM189A2 | family_with_sequence_similarity_189,memberA2_[Source:HGNC_Symbol;Acc:24820] |
| ENSG00000214401 | ||
| ENSG00000099984 | GSTT2 | glutathione_S-transferase_theta_2_[Source:HGNC_Symbol;Acc:4642] |
| ENSG00000238083 | LRRC37A2 | leucine_rich_repeat_containing_37,memberA2_[Source:HGNC_Symbol;Acc:32404] |
| ENSG00000101255 | TRIB3 | tribbles_homolog_3_(Drosophila)_[Source:HGNC_Symbol;Acc:16228] |
| ENSG00000160284 | C21orf56 | chromosome_21_open_reading_frame_56_[Source:HGNC_Symbol;Acc:1298] |
| id | name | description |
|---|---|---|
| ENSG00000022556 | NLRP2 | NLR_family,pyrindomain_containing_2_[Source:HGNC_Symbol;Acc:22948] |
| ENSG00000225607 | NA | Uncharacterized_proteincDNA_FLJ60024,highlysimilar_to_Cytochrome_P450_4F12__[Source:UniProtKB/TrEMBL;Acc:B4DNA9] |
| ENSG00000147813 | NAPRT1 | nicotinate_phosphoribosyltransferase_domain_containing_1_[Source:HGNC_Symbol;Acc:30450] |
| ENSG00000167654 | ATCAY | ataxia,cerebellar,Cayman_type_[Source:HGNC_Symbol;Acc:779] |
| id | name | description |
|---|---|---|
| ENSG00000149054 | ZNF215 | zinc_finger_protein_215_[Source:HGNC_Symbol;Acc:13007] |
| ENSG00000215845 | TSTD1 | thiosulfate_sulfurtransferase_(rhodanese)-like_domain_containing_1_[Source:HGNC_Symbol;Acc:35410] |
| ENSG00000100336 | APOL4 | apolipoprotein_L,4[Source:HGNC_Symbol;Acc:14867] |
| ENSG00000163823 | CCR1 | chemokine_(C-C_motif)receptor1_[Source:HGNC_Symbol;Acc:1602] |
| ENSG00000169220 | RGS14 | regulator_of_G-protein_signaling_14_[Source:HGNC_Symbol;Acc:9996] |
| ENSG00000203804 | C1orf138 | chromosome_1_open_reading_frame_138_[Source:HGNC_Symbol;Acc:32041] |
| ENSG00000204520 | MICA | MHC_class_I_polypeptide-related_sequence_A_[Source:HGNC_Symbol;Acc:7090] |
| ENSG00000080573 | COL5A3 | collagen,typeV,alpha3_[Source:HGNC_Symbol;Acc:14864] |
| ENSG00000165379 | LRFN5 | leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5_[Source:HGNC_Symbol;Acc:20360] |
| ENSG00000213402 | PTPRCAP | protein_tyrosine_phosphatase,receptortype,C-associatedprotein_[Source:HGNC_Symbol;Acc:9667] |
| ENSG00000139155 | SLCO1C1 | solute_carrier_organic_anion_transporter_family,member1C1_[Source:HGNC_Symbol;Acc:13819] |
| ENSG00000187773 | FAM69C | family_with_sequence_similarity_69,memberC_[Source:HGNC_Symbol;Acc:31729] |
| ENSG00000133216 | EPHB2 | EPH_receptor_B2_[Source:HGNC_Symbol;Acc:3393] |
| ENSG00000119737 | GPR75 | G_protein-coupled_receptor_75_[Source:HGNC_Symbol;Acc:4526] |
| ENSG00000126790 | C14orf149 | chromosome_14_open_reading_frame_149_[Source:HGNC_Symbol;Acc:20488] |
| ENSG00000162733 | DDR2 | discoidin_domain_receptor_tyrosine_kinase_2_[Source:HGNC_Symbol;Acc:2731] |
| ENSG00000108231 | LGI1 | leucine-rich,gliomainactivated_1_[Source:HGNC_Symbol;Acc:6572] |
| ENSG00000161921 | CXCL16 | chemokine_(C-X-C_motif)ligand16_[Source:HGNC_Symbol;Acc:16642] |
| ENSG00000119673 | ACOT2 | acyl-CoA_thioesterase_2_[Source:HGNC_Symbol;Acc:18431] |
| ENSG00000135046 | ANXA1 | annexin_A1_[Source:HGNC_Symbol;Acc:533] |
| ENSG00000215790 | SLC35E2 | solute_carrier_family_35,memberE2_[Source:HGNC_Symbol;Acc:20863] |
| ENSG00000157150 | TIMP4 | TIMP_metallopeptidase_inhibitor_4_[Source:HGNC_Symbol;Acc:11823] |
| ENSG00000170579 | DLGAP1 | discs,large(Drosophila)homolog-associatedprotein_1_[Source:HGNC_Symbol;Acc:2905] |
| ENSG00000143252 | SDHC | succinate_dehydrogenase_complex,subunitC,integralmembrane_protein,15kDa[Source:HGNC_Symbol;Acc:10682] |
| ENSG00000107796 | ACTA2 | actin,alpha2,smoothmuscle,aorta[Source:HGNC_Symbol;Acc:130] |
| ENSG00000124193 | SRSF6 | serine/arginine-rich_splicing_factor_6_[Source:HGNC_Symbol;Acc:10788] |
| ENSG00000152661 | GJA1 | gap_junction_protein,alpha1,43kDa[Source:HGNC_Symbol;Acc:4274] |
| ENSG00000184110 | EIF3C | eukaryotic_translation_initiation_factor_3,subunitC_[Source:HGNC_Symbol;Acc:3279] |
| id | name | description |
|---|---|---|
| ENSG00000166923 | GREM1 | gremlin_1_[Source:HGNC_Symbol;Acc:2001] |
| ENSG00000164123 | C4orf45 | chromosome_4_open_reading_frame_45_[Source:HGNC_Symbol;Acc:26342] |
| ENSG00000008196 | TFAP2B | transcription_factor_AP-2_beta_(activating_enhancer_binding_protein_2_beta)_[Source:HGNC_Symbol;Acc:11743] |
| ENSG00000186897 | C1QL4 | complement_component_1,qsubcomponent-like_4_[Source:HGNC_Symbol;Acc:31416] |
| ENSG00000054598 | FOXC1 | forkhead_box_C1_[Source:HGNC_Symbol;Acc:3800] |
| ENSG00000104808 | DHDH | dihydrodiol_dehydrogenase_(dimeric)_[Source:HGNC_Symbol;Acc:17887] |
| ENSG00000124813 | RUNX2 | runt-related_transcription_factor_2_[Source:HGNC_Symbol;Acc:10472] |
| ENSG00000173068 | BNC2 | basonuclin_2_[Source:HGNC_Symbol;Acc:30988] |
| ENSG00000165929 | TC2N | tandem_C2_domains,nuclear[Source:HGNC_Symbol;Acc:19859] |
| ENSG00000157064 | NMNAT2 | nicotinamide_nucleotide_adenylyltransferase_2_[Source:HGNC_Symbol;Acc:16789] |
| ENSG00000243244 | STON1 | stonin_1_[Source:HGNC_Symbol;Acc:17003] |
| ENSG00000173809 | TDRD12 | tudor_domain_containing_12_[Source:HGNC_Symbol;Acc:25044] |
| ENSG00000135333 | EPHA7 | EPH_receptor_A7_[Source:HGNC_Symbol;Acc:3390] |
| ENSG00000231421 | ||
| ENSG00000168675 | C18orf1 | chromosome_18_open_reading_frame_1_[Source:HGNC_Symbol;Acc:1224] |
| ENSG00000156395 | SORCS3 | sortilin-related_VPS10_domain_containing_receptor_3_[Source:HGNC_Symbol;Acc:16699] |
| ENSG00000204103 | MAFB | v-maf_musculoaponeurotic_fibrosarcoma_oncogene_homolog_B_(avian)_[Source:HGNC_Symbol;Acc:6408] |
| ENSG00000168447 | SCNN1B | sodium_channel,nonvoltage-gated1,beta[Source:HGNC_Symbol;Acc:10600] |
| ENSG00000106546 | AHR | aryl_hydrocarbon_receptor_[Source:HGNC_Symbol;Acc:348] |
| ENSG00000117598 | NA | Lipid_phosphate_phosphatase-related_protein_type_5_[Source:UniProtKB/Swiss-Prot;Acc:Q32ZL2] |
| ENSG00000120322 | PCDHB8 | protocadherin_beta_8_[Source:HGNC_Symbol;Acc:8693] |
| ENSG00000250305 | NA | Putative_methyltransferase_KIAA1456_[Source:UniProtKB/Swiss-Prot;Acc:Q9P272] |
| ENSG00000106868 | SUSD1 | sushi_domain_containing_1_[Source:HGNC_Symbol;Acc:25413] |
| ENSG00000183943 | PRKX | protein_kinase,X-linked[Source:HGNC_Symbol;Acc:9441] |
| ENSG00000204060 | FOXO6 | forkhead_box_O6_[Source:HGNC_Symbol;Acc:24814] |
| ENSG00000170941 | NA | Uncharacterized_protein_KIAA1456_[Source:UniProtKB/Swiss-Prot;Acc:Q8N9K7] |
| ENSG00000063438 | AHRR | aryl-hydrocarbon_receptor_repressor_[Source:HGNC_Symbol;Acc:346] |
| ENSG00000107902 | LHPP | phospholysine_phosphohistidine_inorganic_pyrophosphate_phosphatase_[Source:HGNC_Symbol;Acc:30042] |
| ENSG00000169436 | COL22A1 | collagen,typeXXII,alpha1_[Source:HGNC_Symbol;Acc:22989] |
| ENSG00000184985 | SORCS2 | sortilin-related_VPS10_domain_containing_receptor_2_[Source:HGNC_Symbol;Acc:16698] |
| ENSG00000163328 | GPR155 | G_protein-coupled_receptor_155_[Source:HGNC_Symbol;Acc:22951] |
| ENSG00000173598 | NUDT4 | nudix_(nucleoside_diphosphate_linked_moiety_X)-type_motif_4_[Source:HGNC_Symbol;Acc:8051] |
| ENSG00000114200 | BCHE | butyrylcholinesterase_[Source:HGNC_Symbol;Acc:983] |
| ENSG00000183722 | LHFP | lipoma_HMGIC_fusion_partner_[Source:HGNC_Symbol;Acc:6586] |
| ENSG00000139722 | VPS37B | vacuolar_protein_sorting_37_homolog_B_(S.cerevisiae)[Source:HGNC_Symbol;Acc:25754] |
| id | name | description |
|---|---|---|
| ENSG00000145247 | OCIAD2 | OCIA_domain_containing_2_[Source:HGNC_Symbol;Acc:28685] |
| ENSG00000070748 | CHAT | choline_O-acetyltransferase_[Source:HGNC_Symbol;Acc:1912] |
| ENSG00000165659 | DACH1 | dachshund_homolog_1_(Drosophila)_[Source:HGNC_Symbol;Acc:2663] |
| ENSG00000165983 | PTER | phosphotriesterase_related_[Source:HGNC_Symbol;Acc:9590] |
| ENSG00000139220 | PPFIA2 | protein_tyrosine_phosphatase,receptortype,fpolypeptide_(PTPRF),interactingprotein_(liprin),alpha2_[Source:HGNC_Symbol;Acc:9246] |
| ENSG00000147255 | IGSF1 | immunoglobulin_superfamily,member1_[Source:HGNC_Symbol;Acc:5948] |
| ENSG00000146233 | CYP39A1 | cytochrome_P450,family39,subfamilyA,polypeptide1_[Source:HGNC_Symbol;Acc:17449] |
| ENSG00000181649 | PHLDA2 | pleckstrin_homology-like_domain,familyA,member2_[Source:HGNC_Symbol;Acc:12385] |
| ENSG00000204516 | MICB | MHC_class_I_polypeptide-related_sequence_B_[Source:HGNC_Symbol;Acc:7091] |
| ENSG00000164692 | COL1A2 | collagen,typeI,alpha2_[Source:HGNC_Symbol;Acc:2198] |
| ENSG00000114805 | PLCH1 | phospholipase_C,eta1_[Source:HGNC_Symbol;Acc:29185] |
| ENSG00000051523 | CYBA | cytochrome_b-245,alphapolypeptide_[Source:HGNC_Symbol;Acc:2577] |
| ENSG00000145703 | IQGAP2 | IQ_motif_containing_GTPase_activating_protein_2_[Source:HGNC_Symbol;Acc:6111] |
| ENSG00000165072 | MAMDC2 | MAM_domain_containing_2_[Source:HGNC_Symbol;Acc:23673] |
| ENSG00000130558 | OLFM1 | olfactomedin_1_[Source:HGNC_Symbol;Acc:17187] |
| ENSG00000120318 | ARAP3 | ArfGAP_with_RhoGAP_domain,ankyrinrepeat_and_PH_domain_3_[Source:HGNC_Symbol;Acc:24097] |
| ENSG00000198750 | GATSL2 | GATS_protein-like_2_[Source:HGNC_Symbol;Acc:37073] |
| ENSG00000162849 | KIF26B | kinesin_family_member_26B_[Source:HGNC_Symbol;Acc:25484] |
| ENSG00000134333 | LDHA | lactate_dehydrogenase_A_[Source:HGNC_Symbol;Acc:6535] |
| ENSG00000064666 | CNN2 | calponin_2_[Source:HGNC_Symbol;Acc:2156] |
| id | name | description |
|---|---|---|
| ENSG00000259210 | ||
| ENSG00000198650 | TAT | tyrosine_aminotransferase_[Source:HGNC_Symbol;Acc:11573] |
| ENSG00000163053 | SLC16A14 | solute_carrier_family_16,member14_(monocarboxylic_acid_transporter_14)_[Source:HGNC_Symbol;Acc:26417] |
| ENSG00000125637 | PSD4 | pleckstrin_and_Sec7_domain_containing_4_[Source:HGNC_Symbol;Acc:19096] |
| ENSG00000153822 | KCNJ16 | potassium_inwardly-rectifying_channel,subfamilyJ,member16_[Source:HGNC_Symbol;Acc:6262] |
| ENSG00000188803 | SHISA6 | shisa_homolog_6_(Xenopus_laevis)_[Source:HGNC_Symbol;Acc:34491] |
| ENSG00000127952 | STYXL1 | serine/threonine/tyrosine_interacting-like_1_[Source:HGNC_Symbol;Acc:18165] |
| ENSG00000150907 | FOXO1 | forkhead_box_O1_[Source:HGNC_Symbol;Acc:3819] |
| ENSG00000076344 | RGS11 | regulator_of_G-protein_signaling_11_[Source:HGNC_Symbol;Acc:9993] |
| ENSG00000174938 | SEZ6L2 | seizure_related_6_homolog_(mouse)-like_2_[Source:HGNC_Symbol;Acc:30844] |
| ENSG00000122694 | GLIPR2 | GLI_pathogenesis-related_2_[Source:HGNC_Symbol;Acc:18007] |
| ENSG00000167774 | NDUFA7 | NADH_dehydrogenase_(ubiquinone)1alpha_subcomplex,7,14.5kDa_[Source:HGNC_Symbol;Acc:7691] |
| ENSG00000132164 | SLC6A11 | solute_carrier_family_6_(neurotransmitter_transporter,GABA),member_11_[Source:HGNC_Symbol;Acc:11044] |
| Sample | DE_genes | DE_exons | with_expressed_genes | isoform_exons | exclude_DE_genes | isoform_genes | GW |
|---|---|---|---|---|---|---|---|
| Cortex-HuFNSC01_Cortex-HuFNSC03 | 565 | 28637 | 16045 | 8044 | 7772 | 2490 | 17 vs 15 |
| Cortex-HuFNSC01_Cortex-HuFNSC04 | 530 | 27428 | 13200 | 6365 | 6134 | 2167 | 17 vs 13 |
| Cortex-HuFNSC02_Cortex-HuFNSC03 | 681 | 28963 | 16765 | 7961 | 7630 | 2425 | 17 vs 15 |
| Cortex-HuFNSC02_Cortex-HuFNSC04 | 722 | 29416 | 13894 | 6351 | 6011 | 2105 | 17 vs 13 |
| Cortex-HuFNSC03_Cortex-HuFNSC04 | 642 | 26826 | 12185 | 5818 | 5479 | 1994 | 15 vs 13 |
| GE-HuFNSC01_GE-HuFNSC03 | 861 | 31361 | 14725 | 5880 | 5458 | 2041 | 17 vs 15 |
| GE-HuFNSC01_GE-HuFNSC04 | 883 | 34359 | 15889 | 6401 | 5996 | 2049 | 17 vs 13 |
| GE-HuFNSC02_GE-HuFNSC03 | 921 | 32827 | 15557 | 5773 | 5306 | 1965 | 17 vs 15 |
| GE-HuFNSC02_GE-HuFNSC04 | 869 | 34699 | 16012 | 6113 | 5711 | 1986 | 17 vs 13 |
| GE-HuFNSC03_GE-HuFNSC04 | 545 | 24752 | 12223 | 4582 | 4422 | 1454 | 15 vs 13 |